PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G191900.1
Common NameB456_010G191900, LOC105774247
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 430aa    MW: 47544.3 Da    PI: 5.9324
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G191900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.61.3e-14224271254
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++h + Er RR ++N++++ Lr+++P++     +K++ a+i+  A++YIk+L
  Gorai.010G191900.1 224 TTKHFATERERRVHLNDKYQALRTMVPSP-----TKNDRASIVDDAIKYIKEL 271
                         579**************************.....9****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.085222271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.05E-14222290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.10E-11223271No hitNo description
Gene3DG3DSA:4.10.280.108.6E-13225279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-12225271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.9E-10228277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MKVYEESGCF DPHSLTDCQE LMGLPGATPT NCHNSLEDTL TVSSYNHHHH EDASAALDME  60
PQQHYLLDNT TNSHSHLIPY LTQDLPYDQS HWERFNVVPS SSSPEAATAA AAAAGAYTPT  120
PDLLSLFHLP RCSFLPNPSI SFETTPGSPS VVYDPLFHLN LPPQPPVFRE LLQSLPHGYT  180
VPADDKDAAG VGGLYHDGDN GIIQFTRDIS MAGRAKDRDK AGKTTKHFAT ERERRVHLND  240
KYQALRTMVP SPTKNDRASI VDDAIKYIKE LLGTVRELKI LVDKKRCGQE RSKRLKTEDA  300
ASAADAGDVE CKPLGDPDQC YNTSLRSSWL QRKSKDSEVD VRIVDDEVTI KLVQRKKINC  360
LLFVSRLLDE LQLDLQHVAG GNIGDYYSFL FNTKIYEGSS VYACAIANKL IDVVDRQYAA  420
APPTSSTSL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012452120.10.0PREDICTED: transcription factor bHLH91-like
TrEMBLA0A0D2UHE60.0A0A0D2UHE6_G
STRINGVIT_15s0107g00380.t011e-153(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.11e-101bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]